J3_6DZP_023

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6DZP_023 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.255

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

6DZP|1|A|U|1646
6DZP|1|A|G|1647
6DZP|1|A|A|1648
6DZP|1|A|C|1649
6DZP|1|A|G|1650
*
6DZP|1|A|C|1784
6DZP|1|A|C|1785
*
6DZP|1|A|G|1788
6DZP|1|A|A|1789
6DZP|1|A|A|1790
6DZP|1|A|A|1791
6DZP|1|A|A|1792
6DZP|1|A|G|1793

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2