J3_6EK0_003

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6EK0|1|L5|C|962, 6EK0|1|L5|C|967, 6EK0|1|L5|U|971, 6EK0|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|C|712
6EK0|1|L5|C|713
*
6EK0|1|L5|G|955
6EK0|1|L5|A|956
6EK0|1|L5|G|957
6EK0|1|L5|G|958
6EK0|1|L5|G|959
6EK0|1|L5|A|960
6EK0|1|L5|G|961
6EK0|1|L5|C|962
6EK0|1|L5|G|963
6EK0|1|L5|A|964
6EK0|1|L5|G|965
6EK0|1|L5|A|966
6EK0|1|L5|C|967
6EK0|1|L5|C|968
6EK0|1|L5|C|969
6EK0|1|L5|G|970
6EK0|1|L5|U|971
6EK0|1|L5|C|972
6EK0|1|L5|G|973
6EK0|1|L5|C|974
6EK0|1|L5|C|975
6EK0|1|L5|G|976
*
6EK0|1|L5|C|1278
6EK0|1|L5|A|1279
6EK0|1|L5|C|1280
6EK0|1|L5|G|1281
6EK0|1|L5|G|1282
6EK0|1|L5|G|1283
6EK0|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32