J3_6EK0_009

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6EK0|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|A|2551
6EK0|1|L5|G|2552
6EK0|1|L5|A|2553
6EK0|1|L5|U|2554
6EK0|1|L5|G|2555
*
6EK0|1|L5|C|2572
6EK0|1|L5|A|2573
6EK0|1|L5|G|2574
6EK0|1|L5|U|2575
*
6EK0|1|L5|A|2757
6EK0|1|L5|G|2758
6EK0|1|L5|G|2759
6EK0|1|L5|G|2760
6EK0|1|L5|U|2761
6EK0|1|L5|G|2762
6EK0|1|L5|U|2763
6EK0|1|L5|A|2764
6EK0|1|L5|A|2765
6EK0|1|L5|A|2766
6EK0|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27