J3_6EK0_032
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6EK0|1|L5|G|409, 6EK0|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6EK0_032 not in the Motif Atlas
- Homologous match to J3_8CRE_006
- Geometric discrepancy: 0.3234
- The information below is about J3_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6EK0|1|L5|U|380
6EK0|1|L5|U|381
6EK0|1|L5|G|382
6EK0|1|L5|A|383
6EK0|1|L5|A|384
6EK0|1|L5|A|385
6EK0|1|L5|A|386
6EK0|1|L5|G|387
6EK0|1|L5|A|388
6EK0|1|L5|A|389
6EK0|1|L5|C|390
*
6EK0|1|L5|G|401
6EK0|1|L5|A|402
6EK0|1|L5|G|403
6EK0|1|L5|U|404
6EK0|1|L5|U|405
6EK0|1|L5|C|406
6EK0|1|L5|A|407
6EK0|1|L5|A|408
6EK0|1|L5|G|409
6EK0|1|L5|A|410
6EK0|1|L5|G|411
6EK0|1|L5|G|412
6EK0|1|L5|G|413
6EK0|1|L5|C|414
6EK0|1|L5|G|415
*
6EK0|1|L8|C|19
6EK0|1|L8|A|20
Current chains
- Chain L5
- 28S ribosomal RNA
- Chain L8
- 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: