J3_6EK0_035

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)

Length

26 nucleotides

Bulged bases

6EK0|1|L5|C|2470, 6EK0|1|L5|A|2472, 6EK0|1|L5|G|2475, 6EK0|1|L5|G|2503, 6EK0|1|L5|C|2504

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6EK0_035 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5965

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6EK0|1|L5|A|2451
6EK0|1|L5|G|2452
6EK0|1|L5|A|2453
6EK0|1|L5|U|2454
6EK0|1|L5|G|2455
6EK0|1|L5|G|2456
*
6EK0|1|L5|C|2465
6EK0|1|L5|G|2466
6EK0|1|L5|U|2467
6EK0|1|L5|U|2468
6EK0|1|L5|C|2469
6EK0|1|L5|C|2470
6EK0|1|L5|G|2471
6EK0|1|L5|A|2472
6EK0|1|L5|A|2473
6EK0|1|L5|G|2474
6EK0|1|L5|G|2475
6EK0|1|L5|G|2476
*
6EK0|1|L5|C|2501
6EK0|1|L5|G|2502
6EK0|1|L5|G|2503
6EK0|1|L5|C|2504
6EK0|1|L5|C|2505
6EK0|1|L5|G|2506
6EK0|1|L5|A|2507
6EK0|1|L5|PSU|2508

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37