J3_6EK0_041
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- U(OMG)GA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 6EK0|1|S2|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EK0|1|S2|U|682
6EK0|1|S2|OMG|683
6EK0|1|S2|G|684
6EK0|1|S2|A|685
*
6EK0|1|S2|U|917
6EK0|1|S2|U|918
6EK0|1|S2|A|919
6EK0|1|S2|A|920
6EK0|1|S2|G|921
6EK0|1|S2|A|922
6EK0|1|S2|G|923
*
6EK0|1|S2|C|1019
6EK0|1|S2|A|1020
6EK0|1|S2|U|1021
6EK0|1|S2|U|1022
6EK0|1|S2|A|1023
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- 40S ribosomal protein S27
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