J3_6EK0_042
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGGCGCAGCGGAAGCGUGCUGGG*CCCAGAGGUCG*CC
- Length
- 37 nucleotides
- Bulged bases
- 6EK0|1|S6|C|17, 6EK0|1|S6|G|18, 6EK0|1|S6|G|19, 6EK0|1|S6|A|20, 6EK0|1|S6|C|40, 6EK0|1|S6|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EK0|1|S6|G|8
6EK0|1|S6|U|9
6EK0|1|S6|G|10
6EK0|1|S6|G|11
6EK0|1|S6|C|12
6EK0|1|S6|G|13
6EK0|1|S6|C|14
6EK0|1|S6|A|15
6EK0|1|S6|G|16
6EK0|1|S6|C|17
6EK0|1|S6|G|18
6EK0|1|S6|G|19
6EK0|1|S6|A|20
6EK0|1|S6|A|21
6EK0|1|S6|G|22
6EK0|1|S6|C|23
6EK0|1|S6|G|24
6EK0|1|S6|U|25
6EK0|1|S6|G|26
6EK0|1|S6|C|27
6EK0|1|S6|U|28
6EK0|1|S6|G|29
6EK0|1|S6|G|30
6EK0|1|S6|G|31
*
6EK0|1|S6|C|39
6EK0|1|S6|C|40
6EK0|1|S6|C|41
6EK0|1|S6|A|42
6EK0|1|S6|G|43
6EK0|1|S6|A|44
6EK0|1|S6|G|45
6EK0|1|S6|G|46
6EK0|1|S6|U|47
6EK0|1|S6|C|48
6EK0|1|S6|G|49
*
6EK0|1|S6|C|65
6EK0|1|S6|C|66
Current chains
- Chain S6
- Human initiator Met-tRNA-i
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lo
- 60S ribosomal protein L36a
- Chain SF
- 40S ribosomal protein S5
- Chain SO
- 40S ribosomal protein S14
Coloring options: