J3_6EM1_009
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6EM1|1|1|A|398, 6EM1|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6EM1_009 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1096
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6EM1|1|1|A|369
6EM1|1|1|U|370
6EM1|1|1|G|371
6EM1|1|1|A|372
6EM1|1|1|A|373
6EM1|1|1|A|374
6EM1|1|1|A|375
6EM1|1|1|G|376
6EM1|1|1|A|377
6EM1|1|1|A|378
6EM1|1|1|C|379
*
6EM1|1|1|G|390
6EM1|1|1|A|391
6EM1|1|1|G|392
6EM1|1|1|U|393
6EM1|1|1|G|394
6EM1|1|1|A|395
6EM1|1|1|A|396
6EM1|1|1|A|397
6EM1|1|1|A|398
6EM1|1|1|A|399
6EM1|1|1|G|400
6EM1|1|1|U|401
6EM1|1|1|A|402
6EM1|1|1|C|403
6EM1|1|1|G|404
*
6EM1|1|2|C|19
6EM1|1|2|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- Protein MAK16
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain x
- Ribosome production factor 1
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