J3_6EML_008

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAGAC*GGGUGG*CUUAGACG

Length

20 nucleotides

Bulged bases

6EML|1|2|G|1218, 6EML|1|2|G|1445, 6EML|1|2|A|1446

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|C|1215
6EML|1|2|C|1216
6EML|1|2|A|1217
6EML|1|2|G|1218
6EML|1|2|A|1219
6EML|1|2|C|1220
*
6EML|1|2|G|1263
6EML|1|2|G|1264
6EML|1|2|G|1265
6EML|1|2|U|1266
6EML|1|2|G|1267
6EML|1|2|G|1268
*
6EML|1|2|C|1441
6EML|1|2|U|1442
6EML|1|2|U|1443
6EML|1|2|A|1444
6EML|1|2|G|1445
6EML|1|2|A|1446
6EML|1|2|C|1447
6EML|1|2|G|1448

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain e

Essential nuclear protein 1

Chain t

Ribosome biogenesis protein TSR1