J3_6EML_009

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAG*CGAGACC*GGA

Length

13 nucleotides

Bulged bases

6EML|1|2|A|1287

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|U|1282
6EML|1|2|A|1287
6EML|1|2|G|1288
*
6EML|1|2|C|1327
6EML|1|2|G|1328
6EML|1|2|A|1329
6EML|1|2|G|1330
6EML|1|2|A|1331
6EML|1|2|C|1332
6EML|1|2|C|1333
*
6EML|1|2|G|1418
6EML|1|2|G|1419
6EML|1|2|A|1425

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S17-A

Chain F

40S ribosomal protein S16-A