J3_6EML_014

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUC*GACUCUUUG*CAU

Length

30 nucleotides

Bulged bases

6EML|1|2|A|217, 6EML|1|2|U|227, 6EML|1|2|U|238, 6EML|1|2|C|239, 6EML|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EML|1|2|A|213
6EML|1|2|G|214
6EML|1|2|A|215
6EML|1|2|U|216
6EML|1|2|A|217
6EML|1|2|A|218
6EML|1|2|A|219
6EML|1|2|A|220
6EML|1|2|A|221
6EML|1|2|A|222
6EML|1|2|U|223
6EML|1|2|C|224
6EML|1|2|A|225
6EML|1|2|A|226
6EML|1|2|U|227
6EML|1|2|G|228
6EML|1|2|U|229
6EML|1|2|C|230
*
6EML|1|2|G|235
6EML|1|2|A|236
6EML|1|2|C|237
6EML|1|2|U|238
6EML|1|2|C|239
6EML|1|2|U|240
6EML|1|2|U|241
6EML|1|2|U|242
6EML|1|2|G|243
*
6EML|1|2|C|250
6EML|1|2|A|251
6EML|1|2|U|252

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A