J3_6ENF_003

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6ENF|1|A|U|686, 6ENF|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0991

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6ENF|1|A|U|683
6ENF|1|A|G|684
6ENF|1|A|A|685
6ENF|1|A|U|686
6ENF|1|A|C|687
6ENF|1|A|U|688
6ENF|1|A|A|689
*
6ENF|1|A|U|773
6ENF|1|A|G|774
6ENF|1|A|G|775
*
6ENF|1|A|C|791
6ENF|1|A|A|792
6ENF|1|A|A|793
6ENF|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2