J3_6ENF_007

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_007 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1522

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

6ENF|1|A|U|1344
6ENF|1|A|C|1345
6ENF|1|A|G|1346
6ENF|1|A|A|1347
6ENF|1|A|C|1348
6ENF|1|A|C|1349
*
6ENF|1|A|G|1382
6ENF|1|A|A|1383
6ENF|1|A|A|1384
6ENF|1|A|A|1385
*
6ENF|1|A|U|1402
6ENF|1|A|A|1403

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23