J3_6ENF_028

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6ENF|1|A|U|321, 6ENF|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ENF_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1676

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6ENF|1|A|G|297
6ENF|1|A|G|298
6ENF|1|A|A|299
6ENF|1|A|A|300
6ENF|1|A|G|301
*
6ENF|1|A|C|316
6ENF|1|A|G|317
6ENF|1|A|C|318
6ENF|1|A|G|319
6ENF|1|A|A|320
6ENF|1|A|U|321
6ENF|1|A|A|322
6ENF|1|A|C|323
6ENF|1|A|A|324
6ENF|1|A|G|325
*
6ENF|1|A|C|337
6ENF|1|A|G|338
6ENF|1|A|U|339
6ENF|1|A|A|340
6ENF|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24