J3_6ERI_001
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GC*GAAAUGC*GAUUC
- Length
- 14 nucleotides
- Bulged bases
- 6ERI|1|AA|U|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_001 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.1126
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ERI|1|AA|G|55
6ERI|1|AA|C|56
*
6ERI|1|AA|G|69
6ERI|1|AA|A|70
6ERI|1|AA|A|71
6ERI|1|AA|A|72
6ERI|1|AA|U|73
6ERI|1|AA|G|74
6ERI|1|AA|C|75
*
6ERI|1|AA|G|108
6ERI|1|AA|A|109
6ERI|1|AA|U|110
6ERI|1|AA|U|111
6ERI|1|AA|C|112
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AT
- 50S ribosomal protein L23, chloroplastic
- Chain AU
- 50S ribosomal protein L24, chloroplastic
- Chain AY
- 50S ribosomal protein L29, chloroplastic
- Chain Ac
- 50S ribosomal protein L34, chloroplastic
Coloring options: