J3_6ERI_003
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGAUCUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6ERI|1|AA|U|697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_003 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.1019
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ERI|1|AA|U|694
6ERI|1|AA|G|695
6ERI|1|AA|A|696
6ERI|1|AA|U|697
6ERI|1|AA|C|698
6ERI|1|AA|U|699
6ERI|1|AA|A|700
*
6ERI|1|AA|U|784
6ERI|1|AA|A|785
6ERI|1|AA|G|786
*
6ERI|1|AA|C|802
6ERI|1|AA|G|803
6ERI|1|AA|A|804
6ERI|1|AA|A|805
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L2, chloroplastic
- Chain Ac
- 50S ribosomal protein L34, chloroplastic
Coloring options: