J3_6ERI_022
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 6ERI|1|BA|A|925, 6ERI|1|BA|G|926, 6ERI|1|BA|A|928
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_022 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ERI|1|BA|U|905
6ERI|1|BA|U|906
6ERI|1|BA|U|907
6ERI|1|BA|A|908
6ERI|1|BA|A|909
6ERI|1|BA|U|910
6ERI|1|BA|U|911
6ERI|1|BA|C|912
*
6ERI|1|BA|G|923
6ERI|1|BA|A|924
6ERI|1|BA|A|925
6ERI|1|BA|G|926
6ERI|1|BA|A|927
6ERI|1|BA|A|928
6ERI|1|BA|C|929
6ERI|1|BA|C|930
6ERI|1|BA|U|931
6ERI|1|BA|U|932
6ERI|1|BA|A|933
6ERI|1|BA|C|934
*
6ERI|1|BA|G|1170
6ERI|1|BA|G|1171
6ERI|1|BA|C|1172
6ERI|1|BA|G|1173
6ERI|1|BA|A|1174
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BJ
- 30S ribosomal protein S10 alpha, chloroplastic
- Chain BM
- 30S ribosomal protein S13, chloroplastic
- Chain BN
- 30S ribosomal protein S14, chloroplastic
- Chain BS
- 30S ribosomal protein S19, chloroplastic
- Chain BV
- Ribosome-binding factor PSRP1, chloroplastic
Coloring options: