J3_6ERI_034
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUG*CCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6ERI|1|AA|A|2405, 6ERI|1|AA|U|2407, 6ERI|1|AA|A|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ERI_034 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1037
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6ERI|1|AA|G|2299
6ERI|1|AA|U|2300
6ERI|1|AA|G|2301
*
6ERI|1|AA|C|2401
6ERI|1|AA|C|2402
6ERI|1|AA|U|2403
6ERI|1|AA|U|2404
6ERI|1|AA|A|2405
6ERI|1|AA|G|2406
6ERI|1|AA|U|2407
6ERI|1|AA|G|2408
6ERI|1|AA|A|2409
6ERI|1|AA|U|2410
6ERI|1|AA|C|2411
6ERI|1|AA|C|2412
*
6ERI|1|AA|G|2438
6ERI|1|AA|C|2439
6ERI|1|AA|U|2440
6ERI|1|AA|C|2441
6ERI|1|AA|A|2442
6ERI|1|AA|A|2443
6ERI|1|AA|C|2444
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AL
- 50S ribosomal protein L15, chloroplastic
- Chain AW
- 50S ribosomal protein L27, chloroplastic
- Chain Ab
- 50S ribosomal protein L33, chloroplastic
- Chain Ad
- 50S ribosomal protein L35, chloroplastic
Coloring options: