J3_6FAI_001

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FAI_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.0933

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6FAI|1|2|A|41
6FAI|1|2|G|42
*
6FAI|1|2|C|433
6FAI|1|2|G|434
6FAI|1|2|C|435
6FAI|1|2|A|436
6FAI|1|2|A|437
6FAI|1|2|A|438
6FAI|1|2|U|439
*
6FAI|1|2|A|464
6FAI|1|2|G|465
6FAI|1|2|U|466

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1