J3_6FAI_007

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FAI_007 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.1074

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6FAI|1|2|U|1168
6FAI|1|2|G|1169
6FAI|1|2|G|1170
6FAI|1|2|A|1171
*
6FAI|1|2|U|1468
6FAI|1|2|A|1469
6FAI|1|2|C|1470
*
6FAI|1|2|G|1574
6FAI|1|2|G|1575
6FAI|1|2|A|1576
6FAI|1|2|A|1577

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain T

40S ribosomal protein S19-A

Chain l

Serine/threonine-protein kinase RIO2