3D structure

PDB id
6FAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
6FAI|1|2|U|1473, 6FAI|1|2|G|1539
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FAI_013 not in the Motif Atlas
Homologous match to J3_4V88_041
Geometric discrepancy: 0.1165
The information below is about J3_4V88_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.3
Basepair signature
cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
Number of instances in this motif group
5

Unit IDs

6FAI|1|2|C|1470
6FAI|1|2|A|1471
6FAI|1|2|C|1472
6FAI|1|2|U|1473
6FAI|1|2|G|1474
*
6FAI|1|2|C|1533
6FAI|1|2|G|1534
6FAI|1|2|U|1535
6FAI|1|2|G|1536
6FAI|1|2|C|1537
6FAI|1|2|U|1538
6FAI|1|2|G|1539
6FAI|1|2|G|1540
*
6FAI|1|2|C|1571
6FAI|1|2|G|1572
6FAI|1|2|A|1573
6FAI|1|2|G|1574

Current chains

Chain 2
20S ribosomal RNA

Nearby chains

Chain F
40S ribosomal protein S5
Chain S
40S ribosomal protein S18-A
Chain T
40S ribosomal protein S19-A
Chain Z
40S ribosomal protein S25-A
Chain l
Serine/threonine-protein kinase RIO2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1224 s