J3_6FEC_003
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGAG*CAG*CUGGAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_003 not in the Motif Atlas
- Homologous match to J3_8P9A_073
- Geometric discrepancy: 0.2568
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.2
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FEC|1|A|A|812
6FEC|1|A|G|813
6FEC|1|A|A|814
6FEC|1|A|G|815
*
6FEC|1|A|C|825
6FEC|1|A|A|826
6FEC|1|A|G|827
*
6FEC|1|A|C|839
6FEC|1|A|U|840
6FEC|1|A|G|841
6FEC|1|A|G|842
6FEC|1|A|A|843
6FEC|1|A|U|844
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain K
- 40S ribosomal protein S9
- Chain s
- 40S ribosomal protein S24
Coloring options: