J3_6FEC_004
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6FEC|1|A|G|987
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2635
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6FEC|1|A|A|934
6FEC|1|A|U|935
6FEC|1|A|U|936
6FEC|1|A|C|937
*
6FEC|1|A|G|981
6FEC|1|A|G|982
6FEC|1|A|A|983
6FEC|1|A|C|984
6FEC|1|A|C|985
6FEC|1|A|A|986
6FEC|1|A|G|987
6FEC|1|A|A|988
6FEC|1|A|G|989
*
6FEC|1|A|C|996
6FEC|1|A|A|997
6FEC|1|A|U|998
6FEC|1|A|U|999
6FEC|1|A|U|1000
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Z
- 40S ribosomal protein S13
- Chain i
- 40S ribosomal protein S3a
- Chain j
- 40S ribosomal protein S14
- Chain k
- 40S ribosomal protein S26
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