J3_6FEC_009
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FEC_009 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.548
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6FEC|1|A|U|1336
6FEC|1|A|C|1337
6FEC|1|A|U|1338
6FEC|1|A|U|1339
6FEC|1|A|A|1340
6FEC|1|A|G|1341
*
6FEC|1|A|C|1380
6FEC|1|A|G|1381
6FEC|1|A|A|1382
6FEC|1|A|G|1383
6FEC|1|A|A|1384
6FEC|1|A|C|1385
*
6FEC|1|A|G|1477
6FEC|1|A|C|1478
6FEC|1|A|A|1479
6FEC|1|A|A|1480
6FEC|1|A|U|1481
6FEC|1|A|A|1482
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S16
- Chain J
- 40S ribosomal protein S29
- Chain c
- 40S ribosomal protein S2
- Chain e
- 40S ribosomal protein S17
- Chain g
- 40S ribosomal protein S3
- Chain h
- 40S ribosomal protein S20
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