J3_6FEC_014
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UCAGAUCAAAACCAACC*GCUUUG*CUAGA
- Length
- 28 nucleotides
- Bulged bases
- 6FEC|1|A|C|225, 6FEC|1|A|C|275, 6FEC|1|A|U|276, 6FEC|1|A|U|277
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FEC|1|A|U|219
6FEC|1|A|C|220
6FEC|1|A|A|221
6FEC|1|A|G|222
6FEC|1|A|A|223
6FEC|1|A|U|224
6FEC|1|A|C|225
6FEC|1|A|A|226
6FEC|1|A|A|227
6FEC|1|A|A|228
6FEC|1|A|A|229
6FEC|1|A|C|230
6FEC|1|A|C|231
6FEC|1|A|A|232
6FEC|1|A|A|233
6FEC|1|A|C|234
6FEC|1|A|C|235
*
6FEC|1|A|G|274
6FEC|1|A|C|275
6FEC|1|A|U|276
6FEC|1|A|U|277
6FEC|1|A|U|278
6FEC|1|A|G|279
*
6FEC|1|A|C|286
6FEC|1|A|U|287
6FEC|1|A|A|288
6FEC|1|A|G|289
6FEC|1|A|A|290
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain o
- 40S ribosomal protein S8
- Chain q
- 40S ribosomal protein S6
Coloring options: