J3_6FF4_001
3D structure
- PDB id
- 6FF4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human Bact spliceosome core structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCCUUUUGG*CAU*ACGCAAAUU
- Length
- 21 nucleotides
- Bulged bases
- 6FF4|1|2|U|15, 6FF4|1|2|U|16, 6FF4|1|2|U|17, 6FF4|1|2|U|18, 6FF4|1|2|G|19, 6FF4|1|6|C|79, 6FF4|1|6|A|82, 6FF4|1|6|A|83
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FF4|1|2|G|12
6FF4|1|2|C|13
6FF4|1|2|C|14
6FF4|1|2|U|15
6FF4|1|2|U|16
6FF4|1|2|U|17
6FF4|1|2|U|18
6FF4|1|2|G|19
6FF4|1|2|G|20
*
6FF4|1|6|C|55
6FF4|1|6|A|56
6FF4|1|6|U|57
*
6FF4|1|6|A|78
6FF4|1|6|C|79
6FF4|1|6|G|80
6FF4|1|6|C|81
6FF4|1|6|A|82
6FF4|1|6|A|83
6FF4|1|6|A|84
6FF4|1|6|U|85
6FF4|1|6|U|86
Current chains
- Chain 2
- U2 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- SNW domain-containing protein 1
- Chain D
- Pleiotropic regulator 1
- Chain L
- Cell division cycle 5-like protein
- Chain O
- Crooked neck-like protein 1
- Chain Z
- pre mRNA
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