J3_6FKR_009

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_009 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.0553

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6FKR|1|1A|G|1344
6FKR|1|1A|C|1345
6FKR|1|1A|G|1346
6FKR|1|1A|G|1347
6FKR|1|1A|G|1348
6FKR|1|1A|A|1349
6FKR|1|1A|C|1350
*
6FKR|1|1A|G|1381
6FKR|1|1A|G|1382
6FKR|1|1A|C|1383
6FKR|1|1A|A|1384
6FKR|1|1A|G|1385
*
6FKR|1|1A|C|1402
6FKR|1|1A|C|1403

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23