J3_6FKR_034

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_034 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.1547

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6FKR|1|2A|G|1055
6FKR|1|2A|G|1056
6FKR|1|2A|A|1057
*
6FKR|1|2A|U|1081
6FKR|1|2A|U|1082
6FKR|1|2A|U|1083
6FKR|1|2A|A|1084
6FKR|1|2A|A|1085
6FKR|1|2A|A|1086
6FKR|1|2A|G|1087
*
6FKR|1|2A|C|1102
6FKR|1|2A|A|1103
6FKR|1|2A|C|1104

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36