J3_6FKR_035

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_035 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0793

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6FKR|1|2A|C|1298
6FKR|1|2A|G|1299
6FKR|1|2A|U|1300
6FKR|1|2A|A|1301
6FKR|1|2A|A|1302
6FKR|1|2A|G|1303
*
6FKR|1|2A|C|1625
6FKR|1|2A|G|1626
6FKR|1|2A|G|1627
*
6FKR|1|2A|U|1639
6FKR|1|2A|C|1640
6FKR|1|2A|A|1641
6FKR|1|2A|G|1642

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains