J3_6FKR_040

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6FKR|1|2A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_040 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0654

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6FKR|1|2A|C|2517
6FKR|1|2A|A|2518
6FKR|1|2A|U|2519
6FKR|1|2A|C|2520
*
6FKR|1|2A|G|2545
6FKR|1|2A|U|2546
6FKR|1|2A|U|2547
*
6FKR|1|2A|A|2561
6FKR|1|2A|U|2562
6FKR|1|2A|U|2563
6FKR|1|2A|A|2564
6FKR|1|2A|A|2565
6FKR|1|2A|A|2566
6FKR|1|2A|G|2567

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14