J3_6FKR_041

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

6FKR|1|2A|A|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_041 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.116

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6FKR|1|2A|C|2789
6FKR|1|2A|A|2790
6FKR|1|2A|C|2791
*
6FKR|1|2A|G|2805
6FKR|1|2A|G|2807
6FKR|1|2A|U|2808
6FKR|1|2A|A|2809
6FKR|1|2A|A|2810
6FKR|1|2A|G|2811
*
6FKR|1|2A|C|2889
6FKR|1|2A|G|2891
6FKR|1|2A|A|2892
6FKR|1|2A|G|2893
6FKR|1|2A|G|2894

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22