J3_6FKR_072

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6FKR|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FKR_072 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1529

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

6FKR|1|2a|C|990
6FKR|1|2a|U|991
6FKR|1|2a|U|992
6FKR|1|2a|G|993
6FKR|1|2a|A|994
6FKR|1|2a|C|995
6FKR|1|2a|A|996
6FKR|1|2a|U|997
*
6FKR|1|2a|A|1044
6FKR|1|2a|C|1045
6FKR|1|2a|A|1046
6FKR|1|2a|G|1047
*
6FKR|1|2a|C|1210
6FKR|1|2a|U|1211
6FKR|1|2a|U|1212
6FKR|1|2a|A|1213
6FKR|1|2a|C|1214
6FKR|1|2a|G|1215

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z