3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
ACC*GAGGGAGCGAGACCCGUCGCCG*CACGGGGU
Length
33 nucleotides
Bulged bases
6FRK|1|5|C|962, 6FRK|1|5|G|965, 6FRK|1|5|G|1281, 6FRK|1|5|G|1284
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|5|A|711
6FRK|1|5|C|712
6FRK|1|5|C|713
*
6FRK|1|5|G|955
6FRK|1|5|A|956
6FRK|1|5|G|957
6FRK|1|5|G|958
6FRK|1|5|G|959
6FRK|1|5|A|960
6FRK|1|5|G|961
6FRK|1|5|C|962
6FRK|1|5|G|963
6FRK|1|5|A|964
6FRK|1|5|G|965
6FRK|1|5|A|966
6FRK|1|5|C|967
6FRK|1|5|C|968
6FRK|1|5|C|969
6FRK|1|5|G|970
6FRK|1|5|U|971
6FRK|1|5|C|972
6FRK|1|5|G|973
6FRK|1|5|C|974
6FRK|1|5|C|975
6FRK|1|5|G|976
*
6FRK|1|5|C|1278
6FRK|1|5|A|1279
6FRK|1|5|C|1280
6FRK|1|5|G|1281
6FRK|1|5|G|1282
6FRK|1|5|G|1283
6FRK|1|5|G|1284
6FRK|1|5|U|1285

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Ribosomal protein eL28
Chain C
Ribosomal protein uL4
Chain E
Ribosomal protein eL6
Chain F
Ribosomal protein uL30
Chain e
Ribosomal protein eL32
Chain f
Ribosomal protein eL33

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1848 s