J3_6FRK_027

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

6FRK|1|5|A|1534, 6FRK|1|5|G|1641, 6FRK|1|5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FRK|1|5|G|1530
6FRK|1|5|U|1531
6FRK|1|5|G|1532
6FRK|1|5|A|1533
6FRK|1|5|A|1534
6FRK|1|5|C|1535
6FRK|1|5|U|1536
6FRK|1|5|A|1537
*
6FRK|1|5|U|1622
6FRK|1|5|A|1623
6FRK|1|5|G|1624
*
6FRK|1|5|C|1640
6FRK|1|5|G|1641
6FRK|1|5|A|1642
6FRK|1|5|A|1643
6FRK|1|5|C|1644

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain C

Ribosomal protein uL4

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37

Chain l

Ribosomal protein eL39