3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UCGGUUG*CCUUCGUCCU*GUCACGCACGCCGUUCGUGG
Length
37 nucleotides
Bulged bases
6FRK|1|5|C|4883, 6FRK|1|5|C|4937, 6FRK|1|5|C|4939, 6FRK|1|5|G|4951
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FRK|1|5|U|4748
6FRK|1|5|C|4749
6FRK|1|5|G|4750
6FRK|1|5|G|4751
6FRK|1|5|U|4752
6FRK|1|5|U|4753
6FRK|1|5|G|4754
*
6FRK|1|5|C|4879
6FRK|1|5|C|4880
6FRK|1|5|U|4881
6FRK|1|5|U|4882
6FRK|1|5|C|4883
6FRK|1|5|G|4884
6FRK|1|5|U|4885
6FRK|1|5|C|4886
6FRK|1|5|C|4887
6FRK|1|5|U|4888
*
6FRK|1|5|G|4931
6FRK|1|5|U|4932
6FRK|1|5|C|4933
6FRK|1|5|A|4934
6FRK|1|5|C|4935
6FRK|1|5|G|4936
6FRK|1|5|C|4937
6FRK|1|5|A|4938
6FRK|1|5|C|4939
6FRK|1|5|G|4941
6FRK|1|5|C|4942
6FRK|1|5|C|4944
6FRK|1|5|G|4945
6FRK|1|5|U|4946
6FRK|1|5|U|4947
6FRK|1|5|C|4948
6FRK|1|5|G|4949
6FRK|1|5|U|4950
6FRK|1|5|G|4951
6FRK|1|5|G|4952

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain E
Ribosomal protein eL6
Chain M
Ribosomal protein eL14
Chain O
Ribosomal protein uL13
Chain f
Ribosomal protein eL33

Coloring options:

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