3D structure

PDB id
6FT6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
6FT6|1|1|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FT6_003 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.112
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

6FT6|1|1|U|502
6FT6|1|1|C|503
*
6FT6|1|1|G|588
6FT6|1|1|A|589
6FT6|1|1|G|590
6FT6|1|1|G|591
6FT6|1|1|A|592
6FT6|1|1|C|593
6FT6|1|1|U|594
6FT6|1|1|G|595
6FT6|1|1|C|596
6FT6|1|1|G|597
*
6FT6|1|1|C|606
6FT6|1|1|A|607
6FT6|1|1|A|608
6FT6|1|1|G|609
6FT6|1|1|G|610
6FT6|1|1|A|611

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4-A
Chain E
60S ribosomal protein L6-A
Chain F
60S ribosomal protein L7-A
Chain e
60S ribosomal protein L32

Coloring options:


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