J3_6FTG_003

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GCGCAGUC*GUGC*GACGUC

Length

18 nucleotides

Bulged bases

6FTG|1|u|G|703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|G|448
6FTG|1|u|C|449
6FTG|1|u|G|450
6FTG|1|u|C|451
6FTG|1|u|A|452
6FTG|1|u|G|453
6FTG|1|u|U|454
6FTG|1|u|C|455
*
6FTG|1|u|G|701
6FTG|1|u|U|702
6FTG|1|u|G|703
6FTG|1|u|C|704
*
6FTG|1|u|G|1293
6FTG|1|u|A|1294
6FTG|1|u|C|1295
6FTG|1|u|G|1296
6FTG|1|u|U|1297
6FTG|1|u|C|1298

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28