J3_6FTG_022

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GCAGGAC*GCUAAGG*CACCUGC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FTG|1|u|G|1965
6FTG|1|u|C|1966
6FTG|1|u|A|1967
6FTG|1|u|G|1968
6FTG|1|u|G|1969
6FTG|1|u|A|1970
6FTG|1|u|C|1971
*
6FTG|1|u|G|1995
6FTG|1|u|C|1996
6FTG|1|u|U|1997
6FTG|1|u|A|1998
6FTG|1|u|A|1999
6FTG|1|u|G|2000
6FTG|1|u|G|2001
*
6FTG|1|u|C|2016
6FTG|1|u|A|2017
6FTG|1|u|C|2018
6FTG|1|u|C|2019
6FTG|1|u|U|2020
6FTG|1|u|G|2021
6FTG|1|u|C|2022

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain m

eL40

Chain s

60S acidic ribosomal protein P0

Chain t

Ribosomal protein L12