J3_6FTI_020
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 6FTI|1|u|G|409, 6FTI|1|u|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTI_020 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2875
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6FTI|1|u|U|380
6FTI|1|u|U|381
6FTI|1|u|G|382
6FTI|1|u|A|383
6FTI|1|u|A|384
6FTI|1|u|A|385
6FTI|1|u|A|386
6FTI|1|u|G|387
6FTI|1|u|A|388
6FTI|1|u|A|389
6FTI|1|u|C|390
*
6FTI|1|u|G|401
6FTI|1|u|A|402
6FTI|1|u|G|403
6FTI|1|u|U|404
6FTI|1|u|U|405
6FTI|1|u|C|406
6FTI|1|u|A|407
6FTI|1|u|A|408
6FTI|1|u|G|409
6FTI|1|u|A|410
6FTI|1|u|G|411
6FTI|1|u|G|412
6FTI|1|u|G|413
6FTI|1|u|C|414
6FTI|1|u|G|415
*
6FTI|1|w|C|19
6FTI|1|w|A|20
Current chains
- Chain u
- 28S rRNA
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain P
- uL22
- Chain Y
- Ribosomal protein L26
- Chain l
- eL39
- Chain x
- Protein transport protein Sec61 subunit alpha isoform 1
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