J3_6FTJ_009
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTJ_009 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1301
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6FTJ|1|u|U|2440
6FTJ|1|u|C|2441
6FTJ|1|u|G|2442
6FTJ|1|u|G|2443
6FTJ|1|u|U|2444
6FTJ|1|u|C|2445
*
6FTJ|1|u|G|2515
6FTJ|1|u|G|2516
6FTJ|1|u|A|2517
6FTJ|1|u|G|2518
6FTJ|1|u|U|2519
*
6FTJ|1|u|A|2536
6FTJ|1|u|A|2537
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain X
- uL23
- Chain g
- eL34
- Chain k
- eL38
- Chain l
- eL39
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: