J3_6FTJ_011
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTJ_011 not in the Motif Atlas
- Geometric match to J3_8VTW_006
- Geometric discrepancy: 0.3654
- The information below is about J3_8VTW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.4
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FTJ|1|u|C|3937
6FTJ|1|u|G|3938
6FTJ|1|u|G|3939
*
6FTJ|1|u|C|4074
6FTJ|1|u|U|4075
6FTJ|1|u|G|4076
6FTJ|1|u|A|4077
6FTJ|1|u|C|4078
*
6FTJ|1|u|G|4168
6FTJ|1|u|G|4169
6FTJ|1|u|A|4170
6FTJ|1|u|C|4171
6FTJ|1|u|A|4172
6FTJ|1|u|G|4173
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- uL8
- Chain N
- Ribosomal protein L15
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