J3_6FTJ_019
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 6FTJ|1|u|U|354, 6FTJ|1|u|A|362, 6FTJ|1|w|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTJ_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0588
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6FTJ|1|u|C|351
6FTJ|1|u|G|352
6FTJ|1|u|A|353
6FTJ|1|u|U|354
6FTJ|1|u|A|355
6FTJ|1|u|G|356
6FTJ|1|u|U|357
6FTJ|1|u|C|358
6FTJ|1|u|A|359
6FTJ|1|u|A|360
6FTJ|1|u|C|361
6FTJ|1|u|A|362
6FTJ|1|u|A|363
6FTJ|1|u|G|364
6FTJ|1|u|U|365
6FTJ|1|u|A|366
6FTJ|1|u|C|367
*
6FTJ|1|u|G|374
6FTJ|1|u|G|375
6FTJ|1|u|A|376
6FTJ|1|u|A|377
6FTJ|1|u|A|378
6FTJ|1|u|G|379
*
6FTJ|1|w|C|21
6FTJ|1|w|U|22
6FTJ|1|w|C|23
6FTJ|1|w|G|24
Current chains
- Chain u
- 28S rRNA
- Chain w
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: