J3_6FXC_003

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6FXC|1|AA|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.1871

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6FXC|1|AA|C|272
6FXC|1|AA|A|273
6FXC|1|AA|A|274
6FXC|1|AA|A|275
6FXC|1|AA|C|276
*
6FXC|1|AA|G|295
6FXC|1|AA|G|296
6FXC|1|AA|G|297
6FXC|1|AA|U|298
6FXC|1|AA|U|299
6FXC|1|AA|G|300
6FXC|1|AA|U|301
6FXC|1|AA|A|302
*
6FXC|1|AA|U|415
6FXC|1|AA|G|416

Current chains

Chain AA

23S ribosomal RNA

Nearby chains