J3_6FXC_012

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CC*GUUAAU*AAUCG

Length

13 nucleotides

Bulged bases

6FXC|1|AA|U|2853, 6FXC|1|AA|A|2855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_012 not in the Motif Atlas

Homologous match to J3_7RQB_014

Geometric discrepancy: 0.1953

The information below is about J3_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_95952.1

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6FXC|1|AA|C|2834
6FXC|1|AA|C|2835
*
6FXC|1|AA|G|2851
6FXC|1|AA|U|2852
6FXC|1|AA|U|2853
6FXC|1|AA|A|2854
6FXC|1|AA|A|2855
6FXC|1|AA|U|2856
*
6FXC|1|AA|A|2902
6FXC|1|AA|A|2903
6FXC|1|AA|U|2904
6FXC|1|AA|C|2905
6FXC|1|AA|G|2906

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3

Chain AL

50S ribosomal protein L17

Chain AZ

50S ribosomal protein L32