J3_6FXC_026

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AC*GAUAUGC*GAUUU

Length

14 nucleotides

Bulged bases

6FXC|1|BA|U|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_026 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.1297

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6FXC|1|BA|A|56
6FXC|1|BA|C|57
*
6FXC|1|BA|G|70
6FXC|1|BA|A|71
6FXC|1|BA|U|72
6FXC|1|BA|A|73
6FXC|1|BA|U|74
6FXC|1|BA|G|75
6FXC|1|BA|C|76
*
6FXC|1|BA|G|109
6FXC|1|BA|A|110
6FXC|1|BA|U|111
6FXC|1|BA|U|112
6FXC|1|BA|U|113

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23

Chain BW

50S ribosomal protein L29