J3_6FXC_030

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_030 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.0933

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6FXC|1|BA|C|1335
6FXC|1|BA|G|1336
6FXC|1|BA|A|1337
6FXC|1|BA|U|1338
6FXC|1|BA|U|1339
6FXC|1|BA|G|1340
*
6FXC|1|BA|C|1669
6FXC|1|BA|A|1670
6FXC|1|BA|A|1671
*
6FXC|1|BA|U|1683
6FXC|1|BA|A|1684
6FXC|1|BA|A|1685
6FXC|1|BA|G|1686

Current chains

Chain BA

23S ribosomal RNA

Nearby chains