J3_6FXC_039
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FXC_039 not in the Motif Atlas
- Homologous match to J3_5J7L_002
- Geometric discrepancy: 0.139
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
6FXC|1|Ba|C|594
6FXC|1|Ba|G|595
6FXC|1|Ba|G|596
*
6FXC|1|Ba|C|659
6FXC|1|Ba|U|660
6FXC|1|Ba|U|661
6FXC|1|Ba|G|662
*
6FXC|1|Ba|C|762
6FXC|1|Ba|G|763
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bh
- 30S ribosomal protein S8
- Chain Bl
- 30S ribosomal protein S12
- Chain Bo
- 30S ribosomal protein S15
- Chain Bq
- 30S ribosomal protein S17
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