J3_6FXC_044
3D structure
- PDB id
- 6FXC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.76 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6FXC|1|Ba|A|984, 6FXC|1|Ba|G|985, 6FXC|1|Ba|A|987
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FXC_044 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0977
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6FXC|1|Ba|U|964
6FXC|1|Ba|U|965
6FXC|1|Ba|U|966
6FXC|1|Ba|A|967
6FXC|1|Ba|A|968
6FXC|1|Ba|U|969
6FXC|1|Ba|U|970
6FXC|1|Ba|C|971
*
6FXC|1|Ba|G|982
6FXC|1|Ba|A|983
6FXC|1|Ba|A|984
6FXC|1|Ba|G|985
6FXC|1|Ba|A|986
6FXC|1|Ba|A|987
6FXC|1|Ba|C|988
6FXC|1|Ba|C|989
6FXC|1|Ba|U|990
6FXC|1|Ba|U|991
6FXC|1|Ba|A|992
6FXC|1|Ba|C|993
*
6FXC|1|Ba|G|1231
6FXC|1|Ba|G|1232
6FXC|1|Ba|C|1233
6FXC|1|Ba|U|1234
6FXC|1|Ba|A|1235
Current chains
- Chain Ba
- 16S ribosomal RNA
Nearby chains
- Chain Bj
- 30S ribosomal protein S10
- Chain Bm
- 30S ribosomal protein S13
- Chain Bn
- 30S ribosomal protein S14 type Z
- Chain Bs
- 30S ribosomal protein S19
- Chain Bv
- Ribosome hibernation promotion factor
Coloring options: