J3_6FXC_055

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAC*GAUAAUAU*AGUGAAAGACGGUCUUGCUGUCAC

Length

35 nucleotides

Bulged bases

6FXC|1|Aa|U|183, 6FXC|1|Aa|A|211, 6FXC|1|Aa|U|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|Aa|G|142
6FXC|1|Aa|A|143
6FXC|1|Aa|C|144
*
6FXC|1|Aa|G|178
6FXC|1|Aa|A|179
6FXC|1|Aa|U|180
6FXC|1|Aa|A|181
6FXC|1|Aa|A|182
6FXC|1|Aa|U|183
6FXC|1|Aa|A|184
6FXC|1|Aa|U|185
*
6FXC|1|Aa|A|206
6FXC|1|Aa|G|207
6FXC|1|Aa|U|208
6FXC|1|Aa|G|209
6FXC|1|Aa|A|210
6FXC|1|Aa|A|211
6FXC|1|Aa|A|212
6FXC|1|Aa|G|213
6FXC|1|Aa|A|214
6FXC|1|Aa|C|215
6FXC|1|Aa|G|216
6FXC|1|Aa|G|217
6FXC|1|Aa|U|218
6FXC|1|Aa|C|219
6FXC|1|Aa|U|220
6FXC|1|Aa|U|221
6FXC|1|Aa|G|222
6FXC|1|Aa|C|223
6FXC|1|Aa|U|224
6FXC|1|Aa|G|225
6FXC|1|Aa|U|226
6FXC|1|Aa|C|227
6FXC|1|Aa|A|228
6FXC|1|Aa|C|229

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ap

30S ribosomal protein S16

Chain At

30S ribosomal protein S20