J3_6FXC_060

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAAUG*CUCAGUUCGGAUU*AUGAAGCUG

Length

27 nucleotides

Bulged bases

6FXC|1|Aa|U|1250, 6FXC|1|Aa|A|1309, 6FXC|1|Aa|U|1311, 6FXC|1|Aa|U|1312

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6FXC|1|Aa|C|1247
6FXC|1|Aa|A|1248
6FXC|1|Aa|A|1249
6FXC|1|Aa|U|1250
6FXC|1|Aa|G|1251
*
6FXC|1|Aa|C|1306
6FXC|1|Aa|U|1307
6FXC|1|Aa|C|1308
6FXC|1|Aa|A|1309
6FXC|1|Aa|G|1310
6FXC|1|Aa|U|1311
6FXC|1|Aa|U|1312
6FXC|1|Aa|C|1313
6FXC|1|Aa|G|1314
6FXC|1|Aa|G|1315
6FXC|1|Aa|A|1316
6FXC|1|Aa|U|1317
6FXC|1|Aa|U|1318
*
6FXC|1|Aa|A|1339
6FXC|1|Aa|U|1340
6FXC|1|Aa|G|1341
6FXC|1|Aa|A|1342
6FXC|1|Aa|A|1343
6FXC|1|Aa|G|1344
6FXC|1|Aa|C|1345
6FXC|1|Aa|U|1346
6FXC|1|Aa|G|1347

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ag

30S ribosomal protein S7

Chain Am

30S ribosomal protein S13